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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC048006.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 612aa MW: 67698.7 Da PI: 6.4655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5.1e-13 | 442 | 488 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq EcC048006.30 442 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 488 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.1E-55 | 52 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 6.67E-18 | 437 | 501 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.047 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-14 | 441 | 492 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-17 | 442 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 442 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-16 | 444 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MKIELGAGYG PWNDEEKAMV AAVLGTRAFD YLVSRSVSNE NLLMSIGSDE NMQDKLSNLV 60 DHPNSSNFSW NYAIFWQISR SKSGDWLLGW GDGSCREPKD GEESEATRIL NLRLEDEGQQ 120 RMRKRVLDKL HTVFGGSDED NYALGLDRVT DMEMFFLASM YFLFPSGEGG PGKCFASEKH 180 VWLTDALKSS SDYCVRSFLA KSAGIRTIVL VPTDVGVVEL GSVRSVPESS ELVQTIRSSF 240 STNSFMSVKP IAALPMTNEK KDENAPFSNS ALAGKGEAIS KIFGKELTAV NSPGHYREKL 300 AVRKMDSRQS WEPHHNGSKL PFSTPRNGTH DTSWAHAHGV KQLSPVEFYG SQTSASKLEE 360 RMNSGRNDFG LNRYPTPKQV QMQIDFTGAT SRPSVITRPF TADSEHSDVE ASCKEEQGGA 420 ANEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA 480 IAYINELQAK LKIMEADRER FGSTSRDASD VEVNATAEQS NQSPDVDIQA TAADEVVVRV 540 SCPLNSHPAS RVIQAFQEAQ VTVLDSKLST ANDTVFHTFL IKSQGSEQMT KEKLTAAFSR 600 ESNSLEPLSS VG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-23 | 48 | 243 | 5 | 195 | Transcription factor MYC3 |
4rqw_B | 2e-23 | 48 | 243 | 5 | 195 | Transcription factor MYC3 |
4rs9_A | 2e-23 | 48 | 243 | 5 | 195 | Transcription factor MYC3 |
4yz6_A | 2e-23 | 48 | 243 | 5 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 423 | 431 | KRPRKRGRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010055004.1 | 0.0 | PREDICTED: transcription factor bHLH13 | ||||
Swissprot | Q9LNJ5 | 0.0 | BH013_ARATH; Transcription factor bHLH13 | ||||
TrEMBL | A0A059C0Q7 | 0.0 | A0A059C0Q7_EUCGR; Uncharacterized protein | ||||
STRING | POPTR_0014s09520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3758 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |